Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37278

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Found at i:61 original size:3 final size:3

Alignment explanation


    Indices: 53--87  Score: 52
    Period size: 3  Copynumber: 11.7  Consensus size: 3

         43 ACAGCTGCAC

                                             *   *        
         53 CTT CTT CTT CTT CTT CTT CTT CTT CCT CAT CTT CT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT

         88 GTTCTAAACA


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60


Consensus pattern (3 bp):   
CTT

Done.