Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14073

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1596
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23


Found at i:169 original size:3 final size:3

Alignment explanation


    Indices: 161--191  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        151 CAATCACATG

                                                     
        161 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A

        192 AGAGGGCAAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATC

Done.