Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08083

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2436
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28


Found at i:104 original size:27 final size:27

Alignment explanation


    Indices: 50--100  Score: 68
    Period size: 26  Copynumber: 1.9  Consensus size: 27

         40 TGTCTTTCTT

                  *                    
         50 CTCCTCTTCCTATCCCACGCTTTCACC
          1 CTCCTCCTCCTATCCCACGCTTTCACC

                            * *      
         77 CTCCTCCTCCT-TCCCTCTCTTTCA
          1 CTCCTCCTCCTATCCCACGCTTTCA

        101 ACCCCACTCC


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  26   11  0.52
  27   10  0.48

ACGTcount: A:0.08, C:0.53, G:0.02, T:0.37


Consensus pattern (27 bp):   
CTCCTCCTCCTATCCCACGCTTTCACC
Done.