Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15960

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4443
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29


Found at i:81 original size:15 final size:15

Alignment explanation


    Indices: 33--75  Score: 59
    Period size: 15  Copynumber: 2.9  Consensus size: 15

         23 ATGATCTTGC

                  *        
         33 GAGGTCGATGAGCAA
          1 GAGGTCAATGAGCAA

            **             
         48 CCGGTCAATGAGCAA
          1 GAGGTCAATGAGCAA

                         
         63 GAGGTCAATGAGC
          1 GAGGTCAATGAGC

         76 CGGAGGATGA


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.33, C:0.19, G:0.35, T:0.14


Consensus pattern (15 bp):   
GAGGTCAATGAGCAA
Done.