Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38757

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 266

Length: 444
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:406 original size:15 final size:15

Alignment explanation


    Indices: 386--416  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        376 TTGGTCAAAG

                           
        386 GAATATTCATTAGCA
          1 GAATATTCATTAGCA

                           
        401 GAATATTCATTAGCA
          1 GAATATTCATTAGCA

             
        416 G
          1 G

        417 CTTAATCAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32


Consensus pattern (15 bp):   
GAATATTCATTAGCA
Done.