Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27222

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 484

Length: 807
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:428 original size:54 final size:54

Alignment explanation


    Indices: 346--454  Score: 200
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        336 TGTCATTCCA

                                *                                 
        346 GTGGATGGAGAAAATGGAATGAACACCAACAACATTCCTATCAAAAAGAGGACT
          1 GTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACT

                       *                                          
        400 GTGGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACT
          1 GTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACT

             
        454 G
          1 G

        455 GTACTCAGCT


Statistics
Matches: 53,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  54   53  1.00

ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17


Consensus pattern (54 bp):   
GTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACT
Done.