Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35344

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2040
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28


Found at i:933 original size:12 final size:12

Alignment explanation


    Indices: 903--941  Score: 60
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        893 AAGATGGTGT

                  *     
        903 TGATGAGGAAGA
          1 TGATGATGAAGA

                        
        915 TGATGATGAAGA
          1 TGATGATGAAGA

                    *   
        927 TGATGATGCAGA
          1 TGATGATGAAGA

               
        939 TGA
          1 TGA

        942 GAGTGAGGGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.38, C:0.03, G:0.36, T:0.23


Consensus pattern (12 bp):   
TGATGATGAAGA
Done.