Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09372

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 460

Length: 768
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28


Found at i:199 original size:15 final size:15

Alignment explanation


    Indices: 179--207  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        169 TCGTCCTCAG

                           
        179 CCTCTCCTTCATCTC
          1 CCTCTCCTTCATCTC

                          
        194 CCTCTCCTTCATCT
          1 CCTCTCCTTCATCT

        208 TCTTTGTCTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.07, C:0.52, G:0.00, T:0.41


Consensus pattern (15 bp):   
CCTCTCCTTCATCTC
Done.