Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02512

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1821
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25


Found at i:1142 original size:15 final size:15

Alignment explanation


    Indices: 1105--1143  Score: 51
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       1095 AGACACTGGG

                           
       1105 AAAGATGATAATGAA
          1 AAAGATGATAATGAA

               *     *     
       1120 AAATATGATTATGAA
          1 AAAGATGATAATGAA

             *       
       1135 ATAGATGAT
          1 AAAGATGAT

       1144 GAACAGGATG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.54, C:0.00, G:0.18, T:0.28


Consensus pattern (15 bp):   
AAAGATGATAATGAA
Done.