Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15550

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 309

Length: 516
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28


Found at i:337 original size:9 final size:9

Alignment explanation


    Indices: 320--350  Score: 53
    Period size: 9  Copynumber: 3.4  Consensus size: 9

        310 GGTTCATGGC

                *    
        320 ATGATGATG
          1 ATGACGATG

                     
        329 ATGACGATG
          1 ATGACGATG

                     
        338 ATGACGATG
          1 ATGACGATG

                
        347 ATGA
          1 ATGA

        351 TAAATACAAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26


Consensus pattern (9 bp):   
ATGACGATG
Done.