Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32321

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 352

Length: 588
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31


Found at i:338 original size:12 final size:12

Alignment explanation


    Indices: 321--345  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        311 TTGTCACACT

                        
        321 AGAAATTCTAGC
          1 AGAAATTCTAGC

                        
        333 AGAAATTCTAGC
          1 AGAAATTCTAGC

             
        345 A
          1 A

        346 AAGTGGAAAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24


Consensus pattern (12 bp):   
AGAAATTCTAGC
Done.