Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15350

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:809 original size:9 final size:9

Alignment explanation


    Indices: 775--808  Score: 52
    Period size: 9  Copynumber: 3.8  Consensus size: 9

        765 AGAGCATGAA

                     
        775 GAAG-AAAG
          1 GAAGAAAAG

                     
        783 GAAGAAAAG
          1 GAAGAAAAG

                     
        792 GAAGAAAAG
          1 GAAGAAAAG

                    
        801 GAATGAAA
          1 GAA-GAAA

        809 GTGGTGATGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   8    4  0.17
   9   16  0.67
  10    4  0.17

ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03


Consensus pattern (9 bp):   
GAAGAAAAG
Done.