Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11407

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 561

Length: 936
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27


Found at i:646 original size:3 final size:3

Alignment explanation


    Indices: 640--678  Score: 51
    Period size: 3  Copynumber: 13.0  Consensus size: 3

        630 ACCCTCAACA

                                          *   *   *            
        640 TCT TCT TCT TCT TCT TCT TCT TCA TCA TCA TCT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

        679 ACTACTCATT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.08, C:0.33, G:0.00, T:0.59


Consensus pattern (3 bp):   
TCT

Done.