Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24607

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 293

Length: 489
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24


Found at i:350 original size:18 final size:19

Alignment explanation


    Indices: 327--363  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        317 ATGGAAGAAC

                               
        327 CATGGGAA-CAGAAGCTAT
          1 CATGGGAAGCAGAAGCTAT

                     *         
        345 CATGGGAAGGAGAAGCTAT
          1 CATGGGAAGCAGAAGCTAT

        364 AGTGTCGGGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.38, C:0.14, G:0.32, T:0.16


Consensus pattern (19 bp):   
CATGGGAAGCAGAAGCTAT

Done.