Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23184

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1083
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Found at i:1045 original size:30 final size:30

Alignment explanation


    Indices: 1009--1068  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        999 TTCAAACGAG

                                          
       1009 TTAAACCTCAAATTGGTCAACCATGCTGAA
          1 TTAAACCTCAAATTGGTCAACCATGCTGAA

                                          
       1039 TTAAACCTCAAATTGGTCAACCATGCTGAA
          1 TTAAACCTCAAATTGGTCAACCATGCTGAA

       1069 GGGACTCATC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27


Consensus pattern (30 bp):   
TTAAACCTCAAATTGGTCAACCATGCTGAA
Done.