Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37201

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1281
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25


Found at i:670 original size:15 final size:15

Alignment explanation


    Indices: 650--680  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        640 GTTGATAAAG

                           
        650 TATCACAAAATGCTC
          1 TATCACAAAATGCTC

                           
        665 TATCACAAAATGCTC
          1 TATCACAAAATGCTC

             
        680 T
          1 T

        681 CGGAAGGGGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29


Consensus pattern (15 bp):   
TATCACAAAATGCTC
Done.