Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05428

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26


Found at i:458 original size:14 final size:15

Alignment explanation


    Indices: 432--460  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        422 TCAAGTTTTG

                           
        432 GAAGGTACAAGAAAA
          1 GAAGGTACAAGAAAA

                           
        447 GAAGGT-CAAGAAAA
          1 GAAGGTACAAGAAAA

        461 TTTCAGACAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    8  0.57
  15    6  0.43

ACGTcount: A:0.59, C:0.07, G:0.28, T:0.07


Consensus pattern (15 bp):   
GAAGGTACAAGAAAA
Done.