Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28621

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:188 original size:6 final size:6

Alignment explanation


    Indices: 179--203  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        169 GCTCAGTCGA

                                         
        179 AAGCTC AAGCTC AAGCTC AAGCTC A
          1 AAGCTC AAGCTC AAGCTC AAGCTC A

        204 TGCCCAACTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.36, C:0.32, G:0.16, T:0.16


Consensus pattern (6 bp):   
AAGCTC

Done.