Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18717

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 514

Length: 858
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24


Found at i:403 original size:39 final size:39

Alignment explanation


    Indices: 321--404  Score: 114
    Period size: 39  Copynumber: 2.2  Consensus size: 39

        311 TACCGACACC

                                                 **
        321 TCCACCACCAAGTAACATCATCCACAGCCCACCAACACC
          1 TCCACCACCAAGTAACATCATCCACAGCCCACCAACAAA

                     *              *     *   *    
        360 TCCACCACCGAGTAACATCATCCATAGCCCGCCAGCAAA
          1 TCCACCACCAAGTAACATCATCCACAGCCCACCAACAAA

                  
        399 TCCACC
          1 TCCACC

        405 GGAAGCAGCT


Statistics
Matches: 39,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.33, C:0.46, G:0.08, T:0.12


Consensus pattern (39 bp):   
TCCACCACCAAGTAACATCATCCACAGCCCACCAACAAA
Done.