Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30773

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 491

Length: 819
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32


Found at i:33 original size:16 final size:17

Alignment explanation


    Indices: 10--54  Score: 56
    Period size: 16  Copynumber: 2.7  Consensus size: 17

          1 ATGCTTCAA

                     *    *  
         10 TCTCTCCTTTCCCTTTC
          1 TCTCTCCTTCCCCTCTC

                             
         27 T-TCTCCTTCCCCTCTC
          1 TCTCTCCTTCCCCTCTC

                   *    
         43 TCTCTCCCTCCC
          1 TCTCTCCTTCCC

         55 TTCCATAACC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  16   14  0.58
  17   10  0.42

ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44


Consensus pattern (17 bp):   
TCTCTCCTTCCCCTCTC
Done.