Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07926

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 460

Length: 768
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23


Found at i:165 original size:21 final size:21

Alignment explanation


    Indices: 141--189  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        131 ACTACAAATT

                     *           
        141 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCCGCTTTTGCACC

                                 
        162 GCCTCCTGCCGCTTTTGCACC
          1 GCCTCCTGCCGCTTTTGCACC

                   
        183 GCCTCCT
          1 GCCTCCT

        190 CCAATACAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.04, C:0.47, G:0.18, T:0.31


Consensus pattern (21 bp):   
GCCTCCTGCCGCTTTTGCACC
Done.