Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16565

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4245
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:4048 original size:6 final size:6

Alignment explanation


    Indices: 4032--4075  Score: 61
    Period size: 6  Copynumber: 7.3  Consensus size: 6

       4022 ACAATGTTGG

                   *      *      *                             
       4032 AAATGA TAATGA CAATGA CAATGA AAATGA AAATGA AAATGA AA
          1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AA

       4076 GGTGCAGTGA


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.61, C:0.05, G:0.16, T:0.18


Consensus pattern (6 bp):   
AAATGA

Done.