Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01448

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3345
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27


Found at i:1393 original size:24 final size:24

Alignment explanation


    Indices: 1357--1405  Score: 82
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1347 ACCGTCGTGG

                                    
       1357 ACACCGGTGACAACTCCTGGTGTA
          1 ACACCGGTGACAACTCCTGGTGTA

                                     
       1381 ACACCGGCT-ACAACTCCTGGTGTA
          1 ACACCGG-TGACAACTCCTGGTGTA

             
       1405 A
          1 A

       1406 GAAGCTATGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  24   23  0.96
  25    1  0.04

ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20


Consensus pattern (24 bp):   
ACACCGGTGACAACTCCTGGTGTA
Done.