Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22689

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 921
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.21


Found at i:848 original size:6 final size:6

Alignment explanation


    Indices: 837--883  Score: 67
    Period size: 6  Copynumber: 7.8  Consensus size: 6

        827 AACAGCAGTT

                                           *      *      *        
        837 CCAGCA CCAGCA CCAGCA CCAGCA CCAACA CCAACA CCAACA CCAGC
          1 CCAGCA CCAGCA CCAGCA CCAGCA CCAGCA CCAGCA CCAGCA CCAGC

        884 CCCCTCCCAA


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.38, C:0.51, G:0.11, T:0.00


Consensus pattern (6 bp):   
CCAGCA

Done.