Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25310

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2346
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:2215 original size:54 final size:54

Alignment explanation


    Indices: 2155--2260  Score: 194
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       2145 TGAAGGACAC

                                                      *           
       2155 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACGGTAATGGAATG
          1 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACAGTAATGGAATG

                                                    *           
       2209 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCTCAGTAATGGAA
          1 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACAGTAATGGAA

       2261 CGAATGAGCC


Statistics
Matches: 50,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  54   50  1.00

ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19


Consensus pattern (54 bp):   
AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACAGTAATGGAATG
Done.