Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39774

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 753
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31


Found at i:675 original size:3 final size:3

Alignment explanation


    Indices: 667--691  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        657 TGAGGCAATT

                                             
        667 GAA GAA GAA GAA GAA GAA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA G

        692 GCGGCTCAGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (3 bp):   
GAA

Done.