Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37381

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 279

Length: 465
ACGTcount: A:0.19, C:0.17, G:0.37, T:0.27


Found at i:439 original size:18 final size:18

Alignment explanation


    Indices: 412--447  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        402 TGGTGAAGGT

                 *            
        412 TATGGCGAGGGACATGGC
          1 TATGGAGAGGGACATGGC

                       *      
        430 TATGGAGAGGGTCATGGC
          1 TATGGAGAGGGACATGGC

        448 AGCGGTGGGG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.22, C:0.14, G:0.44, T:0.19


Consensus pattern (18 bp):   
TATGGAGAGGGACATGGC
Done.