Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21038

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 309
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40


Found at i:118 original size:31 final size:30

Alignment explanation


    Indices: 75--136  Score: 97
    Period size: 31  Copynumber: 2.0  Consensus size: 30

         65 TAGACACAGG

                              *           
         75 TAAGCCTTTTTTTCTTCCGTTCTTCAACTT
          1 TAAGCCTTTTTTTCTTCCATTCTTCAACTT

                 *                         
        105 TAAGCTTTCTTTTTCTTCCATTCTTCAACTT
          1 TAAGCCTT-TTTTTCTTCCATTCTTCAACTT

             
        136 T
          1 T

        137 TTCCATCTCG


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  30    7  0.24
  31   22  0.76

ACGTcount: A:0.15, C:0.26, G:0.05, T:0.55


Consensus pattern (30 bp):   
TAAGCCTTTTTTTCTTCCATTCTTCAACTT
Done.