Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16691

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7822
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:5210 original size:15 final size:15

Alignment explanation


    Indices: 5190--5222  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       5180 CTCGAGGAGA

                  *        
       5190 AACAGAGACTTGCTG
          1 AACAGAAACTTGCTG

                           
       5205 AACAGAAACTTGCTG
          1 AACAGAAACTTGCTG

               
       5220 AAC
          1 AAC

       5223 CTGAAATGCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18


Consensus pattern (15 bp):   
AACAGAAACTTGCTG
Done.