Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25389

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2127
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24


Found at i:189 original size:27 final size:27

Alignment explanation


    Indices: 151--205  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        141 CCCTGATACG

                                       
        151 GCTGCTGGGGATCCAAAGTCCAAGGAC
          1 GCTGCTGGGGATCCAAAGTCCAAGGAC

                                       
        178 GCTGCTGGGGATCCAAAGTCCAAGGAC
          1 GCTGCTGGGGATCCAAAGTCCAAGGAC

             
        205 G
          1 G

        206 AGACATCTGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15


Consensus pattern (27 bp):   
GCTGCTGGGGATCCAAAGTCCAAGGAC
Done.