Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03226

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 977

Length: 1629
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:1058 original size:48 final size:48

Alignment explanation


    Indices: 987--1084  Score: 196
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        977 CATATGTTCC

                                                            
        987 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
          1 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

                                                            
       1035 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
          1 ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA

              
       1083 AC
          1 AC

       1085 GAAATCCTGC


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   50  1.00

ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24


Consensus pattern (48 bp):   
ACCAGAGAACATTGAGAACATTACTTCTGCTCATGCATCACAGTATCA
Done.