Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33379

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2051
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:1933 original size:12 final size:12

Alignment explanation


    Indices: 1916--1950  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       1906 ATCAAGTAAG

                        
       1916 TGATTCTGATTA
          1 TGATTCTGATTA

                      * 
       1928 TGATTCTGATGA
          1 TGATTCTGATTA

                 *     
       1940 TGATTTTGATT
          1 TGATTCTGATT

       1951 TCAGCATTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.23, C:0.06, G:0.20, T:0.51


Consensus pattern (12 bp):   
TGATTCTGATTA
Done.