Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19569

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1953
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22


Found at i:730 original size:27 final size:27

Alignment explanation


    Indices: 673--731  Score: 66
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        663 TTCATACAGC

                    * *               *
        673 TCTGATTCCGGTTCTGATTCCTATTCT
          1 TCTGATTCAGATTCTGATTCCTATTCA

                                   *    
        700 TCTGATTCAGATTCTGATGT-CTCTTCA
          1 TCTGATTCAGATTCTGAT-TCCTATTCA

                 
        727 TCTGA
          1 TCTGA

        732 GTCAAGTTCC


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  27   26  0.96
  28    1  0.04

ACGTcount: A:0.15, C:0.24, G:0.15, T:0.46


Consensus pattern (27 bp):   
TCTGATTCAGATTCTGATTCCTATTCA
Done.