Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24538

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 212

Length: 354
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23


Found at i:325 original size:21 final size:21

Alignment explanation


    Indices: 299--342  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        289 CCCTCTTTCA

                                 
        299 ACTCCGACACAAACAAAAATG
          1 ACTCCGACACAAACAAAAATG

                      *          
        320 ACTCCGACACTAACAAAAATG
          1 ACTCCGACACAAACAAAAATG

              
        341 AC
          1 AC

        343 AATAGCAAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.50, C:0.30, G:0.09, T:0.11


Consensus pattern (21 bp):   
ACTCCGACACAAACAAAAATG
Done.