Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32229

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1260
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26


Found at i:528 original size:12 final size:12

Alignment explanation


    Indices: 508--546  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        498 CCGCCCCAAT

                *       
        508 CCTAACCCTAAC
          1 CCTAGCCCTAAC

                      * 
        520 CCTAGCCCTAGC
          1 CCTAGCCCTAAC

              *         
        532 CCCAGCCCTAAC
          1 CCTAGCCCTAAC

               
        544 CCT
          1 CCT

        547 TCGATTAATT


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.23, C:0.54, G:0.08, T:0.15


Consensus pattern (12 bp):   
CCTAGCCCTAAC
Done.