Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28745

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.18


Found at i:827 original size:12 final size:12

Alignment explanation


    Indices: 812--844  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        802 GAAGAAGCTG

                        
        812 AGAAAGAAACCA
          1 AGAAAGAAACCA

                 *      
        824 AGAAAAAAACCA
          1 AGAAAGAAACCA

                     
        836 AGAAAGAAA
          1 AGAAAGAAA

        845 GGGATCCCTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.73, C:0.12, G:0.15, T:0.00


Consensus pattern (12 bp):   
AGAAAGAAACCA
Done.