Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08331

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3918
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26


Found at i:1430 original size:12 final size:12

Alignment explanation


    Indices: 1410--1440  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       1400 GGAAAACAGG

                        
       1410 AAAGAAGATGAA
          1 AAAGAAGATGAA

                *       
       1422 AAAGGAGATGAA
          1 AAAGAAGATGAA

                   
       1434 AAAGAAG
          1 AAAGAAG

       1441 CGAAAAGATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06


Consensus pattern (12 bp):   
AAAGAAGATGAA
Done.