Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30732

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31


Found at i:51 original size:21 final size:21

Alignment explanation


    Indices: 25--66  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         15 TCAAATTGAT

                  *              
         25 GGCAATTTGAATCCATCAAAA
          1 GGCAATATGAATCCATCAAAA

                     *    *      
         46 GGCAATATGGATCCGTCAAAA
          1 GGCAATATGAATCCATCAAAA

         67 TTTAAGCGAC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21


Consensus pattern (21 bp):   
GGCAATATGAATCCATCAAAA
Done.