Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28155

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 511

Length: 852
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:435 original size:3 final size:3

Alignment explanation


    Indices: 427--469  Score: 50
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        417 GAGTACCAAT

                        *   *    *            *                      
        427 TCA TCA TCA ACA ACA TTA TCA TCA TCT TCA TCA TCA TCA TCA T
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T

        470 TAAGGACATC


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.35, C:0.30, G:0.00, T:0.35


Consensus pattern (3 bp):   
TCA

Done.