Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36312

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1563
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30


Found at i:1135 original size:20 final size:21

Alignment explanation


    Indices: 1097--1135  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1087 CAAAGATATG

                       *  *      
       1097 ATGATGAAGCTTTTGTCATCT
          1 ATGATGAAGCTCTTCTCATCT

                               
       1118 ATGATG-AGCTCTTCTCAT
          1 ATGATGAAGCTCTTCTCAT

       1136 ATGCATGTCC


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20   10  0.62
  21    6  0.38

ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41


Consensus pattern (21 bp):   
ATGATGAAGCTCTTCTCATCT
Done.