Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07337

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4880
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29


Found at i:3020 original size:21 final size:21

Alignment explanation


    Indices: 2991--3050  Score: 75
    Period size: 21  Copynumber: 2.9  Consensus size: 21

       2981 TACAAGAAGG

                             *   
       2991 AACTTGAGTTTCAGGAACTGC
          1 AACTTGAGTTTCAGGAAATGC

              *           *      
       3012 AAGTTGAGTTTCAGAAAATGC
          1 AACTTGAGTTTCAGGAAATGC

                    *  *      
       3033 AACTTGAGCTTGAGGAAA
          1 AACTTGAGTTTCAGGAAA

       3051 CAAAAGAGTT


Statistics
Matches: 32,  Mismatches: 7, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27


Consensus pattern (21 bp):   
AACTTGAGTTTCAGGAAATGC
Done.