Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37777

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 394

Length: 657
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23


Found at i:545 original size:21 final size:21

Alignment explanation


    Indices: 519--558  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        509 AAATTGCTCA

                    *            
        519 ACTTAAAGCGGAGGCAGCATC
          1 ACTTAAAGAGGAGGCAGCATC

                               
        540 ACTTAAAGAGGAGGCAGCA
          1 ACTTAAAGAGGAGGCAGCA

        559 GCGAGGGAAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.38, C:0.20, G:0.30, T:0.12


Consensus pattern (21 bp):   
ACTTAAAGAGGAGGCAGCATC
Done.