Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26718

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2244
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:433 original size:6 final size:6

Alignment explanation


    Indices: 422--447  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        412 GATGAGTCAT

                                          
        422 TGGCAA TGGCAA TGGCAA TGGCAA TG
          1 TGGCAA TGGCAA TGGCAA TGGCAA TG

        448 CCACCGCCCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.31, C:0.15, G:0.35, T:0.19


Consensus pattern (6 bp):   
TGGCAA

Done.