Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35130

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 753
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25


Found at i:436 original size:6 final size:6

Alignment explanation


    Indices: 425--452  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        415 AGTGAAGAAA

                                            
        425 CGGAGC CGGAGC CGGAGC CGGAGC CGGA
          1 CGGAGC CGGAGC CGGAGC CGGAGC CGGA

        453 CTCTGAGTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.18, C:0.32, G:0.50, T:0.00


Consensus pattern (6 bp):   
CGGAGC

Done.