Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12519

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26


Found at i:157 original size:18 final size:18

Alignment explanation


    Indices: 136--177  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        126 GGAAGAAGAC

                    *     *   
        136 GAAGAATCTGAAGGCGAA
          1 GAAGAATCCGAAGGAGAA

                *             
        154 GAAGCATCCGAAGGAGAA
          1 GAAGAATCCGAAGGAGAA

                  
        172 GAAGAA
          1 GAAGAA

        178 GCTTCCGAAG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.48, C:0.12, G:0.33, T:0.07


Consensus pattern (18 bp):   
GAAGAATCCGAAGGAGAA
Done.