Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08390

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 321
ACGTcount: A:0.18, C:0.18, G:0.37, T:0.27


Found at i:218 original size:24 final size:24

Alignment explanation


    Indices: 173--219  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        163 GGTGATTTGA

                  *         **      
        173 TACATGCGGTGGCGCTGGGTGTGG
          1 TACATGAGGTGGCGCTACGTGTGG

                                   
        197 TACATGAGGTGGCGCTACGTGTG
          1 TACATGAGGTGGCGCTACGTGTG

        220 AGTGATGGGC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.13, C:0.17, G:0.45, T:0.26


Consensus pattern (24 bp):   
TACATGAGGTGGCGCTACGTGTGG
Done.