Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17347

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 603
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28


Found at i:337 original size:3 final size:3

Alignment explanation


    Indices: 331--356  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        321 TGGTGACGAA

                                              
        331 GAG GAG GAG GAG GAG GAG GAG GAG GA
          1 GAG GAG GAG GAG GAG GAG GAG GAG GA

        357 ATTGGTCACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00


Consensus pattern (3 bp):   
GAG

Done.