Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01356

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2136
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25


Found at i:323 original size:12 final size:12

Alignment explanation


    Indices: 303--335  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        293 AGGATGAAAG

                *       
        303 TTCAACTTCAGT
          1 TTCAGCTTCAGT

                        
        315 TTCAGCTTCAGT
          1 TTCAGCTTCAGT

                     
        327 TTCAGCTTC
          1 TTCAGCTTC

        336 TTTAACAACA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42


Consensus pattern (12 bp):   
TTCAGCTTCAGT
Done.