Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03270

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 475

Length: 793
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26


Found at i:135 original size:12 final size:12

Alignment explanation


    Indices: 91--138  Score: 51
    Period size: 12  Copynumber: 4.0  Consensus size: 12

         81 GAGCACAAGC

                     *  
         91 CCGACACCGTCA
          1 CCGACACCGGCA

              **    *   
        103 CCCTCACCAGCA
          1 CCGACACCGGCA

               *        
        115 CCGGCACCGGCA
          1 CCGACACCGGCA

                        
        127 CCGACACCGGCA
          1 CCGACACCGGCA

        139 TACACAAATA


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  12   28  1.00

ACGTcount: A:0.23, C:0.52, G:0.21, T:0.04


Consensus pattern (12 bp):   
CCGACACCGGCA
Done.