Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05919

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26


Found at i:703 original size:15 final size:15

Alignment explanation


    Indices: 683--718  Score: 56
    Period size: 15  Copynumber: 2.4  Consensus size: 15

        673 AGTGGCGGCA

                            
        683 GTGGTGGCGGTTGG-G
          1 GTGGTGGCGG-TGGAG

                           
        698 GTGGTGGCGGTGGAG
          1 GTGGTGGCGGTGGAG

                  
        713 GTGGTG
          1 GTGGTG

        719 AGTTTAATTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  14    3  0.15
  15   17  0.85

ACGTcount: A:0.03, C:0.06, G:0.67, T:0.25


Consensus pattern (15 bp):   
GTGGTGGCGGTGGAG
Done.